:: Maize GenomeAssembly ::

Assembly Statistics

	MAGIs 4.0	MAGIs 3.1
Input data (No. GSS)	3,126,130	879,523
Assembly Size (MB)	268.1	176.9
% GC	45.2	45.6
% bp Masked	50.4	14.7
No. Contigs	163,390	114,173
Avg No. GSS per Contig	6.55	5.85
Average Contig Length (bp)	1,641	1,550
Maximum Contig Length (bp)	36,517	12,498
No. Singletons	536,377	212,127

Repeat Masking

	MAGIs 4.0	MAGIs 3.1
HC	3% of 357 MB	6.8% of 280 MB
MF	14% of 335 MB	15.9% of 266.2 MB
Shotgun	64% of 870 MB	74% of 31.7 MB
BAC	68% of 964 MB	-
Total	50.4% of 2526 MB	14.6% of 577.9 MB

Distribution of Contig Size in MAGIs 4.0 and MAGIs 3.1

Size

MAGIs 4.0

No. of Contigs	Avg No. GSS per Contig

MAGIs 3.1

No. of Contigs	Avg No. GSS per Contig

< 1 kb

33,969

2.28

32,034

2.31

1 ≤ size < 2kb

93,077

3.92

57,647

4.27

2 ≤ size < 3kb

24,007

10.21

16,088

10.61

3 ≤ size < 4kb

7,625

18.05

5,312

17.10

4 ≤ size < 5kb

2556

26.52

1946

23.56

5 ≤ size < 6kb

1011

40.23

694

30.19

6 ≤ size < 7kb

436

59.86

267

37.75

<7 ≤ size < 8kb

222

79.5

115

43.85

8 ≤ size < 9kb

117

118.38

49.33

9 ≤ size < 10kb

135.96

57.19

10 ≤ size < 11kb

174.52

67.88

11 ≤ size < 12kb

180.46

81.67

12 ≤ size < 13kb

188.59

13 ≤ size < 14kb

218.38

14 ≤ size < 15kb

259.74

> 15kb

318.47

Clone Statistics for MAGIs 3.1 and MAGI 4.0

Total Number of plasmid clones	512,484	710,114
MAGIs composed of a single clone	28,501	22,856
Clones assembled with other clones into MAGIs	389,799	687,336
Average number of clones per MAGI	3.66	4.98
Maximum number of clones per MAGI	124	740
Clones split between two assembled MAGIs	23,711	104,203

Click here to see the assembly methods.