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Iowa State University NSF
Marker Details
IDP1464
IDP
Co-Dominant
Size
Chr01 - 8.9 cM (View on CMap)
Sequences
18170247
MAGIv4_40264
MEC_65019_P95-Mar06; MEC_28414_P95-Mar06; MEC_28417_P95-Mar06; MEC_65017_P95-Mar06; MEC_65018_P95-Mar06; MEC_4836_P95-Mar06; MEC_4835_P95-Mar06; MEC_5018_P95-Mar06; MEC_7166_P95-Mar06; MEC_7165_P95-Mar06; MEC_65068_P95-Mar06; MEC_57327_P95-Mar06; MEC_57326_P95-Mar06; MEC_65179_P95-Mar06; MEC_79263_P95-Mar06; MEC_101495_P95-Mar06; MEC_95664_P95-Mar06; MEC_101566_P95-Mar06; MEC_98993_P95-Mar06; 71768505; 67019992; 67015020; 21843294; 78022162; 302474_3499_3632; 243030_1395_3928; 198340_0701_1826; 88749430; 78075115; 78025508; 84351422; 71431770; 78085835; 32799544; 71431771; 71773139; 21626199; 76280401; 76280402
Related Microarray Spots
Platform Direct Match Indirect Match
Chip SAM3.0 (GPL3538) - B-4-2-8-5, A-5-1-2-7, A-1-3-13-14
Chip SAM1.2 (GPL4521) - A-2-1-19-10, A-3-2-4-2, A-8-4-6-5, B-2-4-2-14
Chip SAM1.1 (GPL3333) - A-5-1-18-3, A-5-2-4-19, A-6-3-6-1, B-4-4-7-12
Primer Info
Forward M318C0631F ATCCATTATGCCCTAGACGG 20
Reverse M318C0631R CTTTCTGGCAAAGGAAGTGC 20
Gradient Test of Primer
Setup Conditions for 20µl PCR Reaction PCR Program
DNA (~20 ng) 2.5 µl
10X PCR Buffer 2.0 µl
2 mM dNTP 2.0 µl
50 mM MgCl2 0.8 µl
5 µM Forward Primer 2.0 µl
5 µM Reverse Primer 2.0 µl
Taq (1u/µl) 1.0 µl
dH2O 7.7 µl
Total 20.0 µl
  • Step 1: 94°C - 3 mins
  • Step 2: 94°C - 30 secs
  • Step 3: Annealing Temp °C(Tm) - 45 secs
  • Step 4: 72°C - 1 min 30 secs
  • Step 5: Go to step 2 for 30 cycles
  • Step 6: 72°C - 10 mins
  • Step 7: END
Tm values were calculated by primer3 design software. Details on their implementation can be found here. For a complete list of Tm values for all ISU mapped markers, click here.
« Download Inbred Scores »
24-Inbred Survey
  • Setup conditions for 20µl PCR reaction: same as described above, use 60°C as Annealing Temperature.
Inbred Scores
1
B109
4
2
Pa91
4
3
Va35
4
4
B84
3
5
N194
3
6
H84
4
7
N801W
4
8
N209
4
9
B113
3
10
B77
3
11
NC314
4
12
Mo44
3
13
B104
4
14
NC264
3
15
B73
4
16
Mo17
5
17
N7A
4
18
Oh43
7
19
R177
4
20
N28Ht
4
21
N215
3
22
C123
4
23
SD46
4
24
Va85
3

Score Legend
+ + + B=M=I 1
+ + + B=M, B≠I, M≠I 2
+ + + B≠M≠I 3
+ + + B≠M, B=I, M≠I 4
+ + + B≠M, B≠I, M=I 5
+ + - B=M 6
+ + - B≠M 7
+ - -   8
+ - + B=I 9
+ - + B≠I 10
- + -   11
- + + M=I 12
- + + M≠I 13
- - -   14
- - +   15
« Download IBM 91RI Scores »
Intermated B73 x Mo17 (IBM) Map
IBM Map Scores
1
M0001
1
2
M0005
2
3
M0007
1
4
M0008
2
5
M0010
2
6
M0012
2
7
M0014
1
8
M0015
1
9
M0016
1
10
M0017
1
11
M0021
1
12
M0022
2
13
M0023
2
14
M0024
2
15
M0025
2
16
M0027
1
17
M0028
1
18
M0029
1
19
M0030
2
20
M0031
1
21
M0032
2
22
M0033
2
23
M0034
2
24
M0035
1
25
M0039
1
26
M0040
2
27
M0043
1
28
M0045
1
29
M0046
2
30
M0048
2
31
M0051
1
32
M0052
1
33
M0054
2
34
M0055
1
35
M0057
2
36
M0058
2
37
M0060
2
38
M0061
1
39
M0063
1
40
M0066
1
41
M0067
2
42
M0074
1
43
M0075
1
44
M0076
1
45
M0077
2
46
M0079
2
47
M0262
1
48
M0264
2
49
M0265
1
50
M0266
1
51
M0267
1
52
M0269
2
53
M0272
2
54
M0275
2
55
M0276
1
56
M0281
2
57
M0284
2
58
M0287
1
59
M0288
1
60
M0296
1
61
M0297
2
62
M0298
2
63
M0309
2
64
M0310
2
65
M0311
2
66
M0315
2
67
M0317
2
68
M0321
2
69
M0322
1
70
M0323
2
71
M0325
1
72
M0326
2
73
M0328
1
74
M0337
2
75
M0341
1
76
M0344
1
77
M0345
2
78
M0346
2
79
M0352
1
80
M0354
1
81
M0355
2
82
M0357
2
83
M0360
2
84
M0364
1
85
M0365
1
86
M0368
2
87
M0369
1
88
M0378
2
89
M0379
1
90
M0382
1
91
M0384
2
          

IBM Map Legend
Missing Data or Heterozygous 0
B73 1
Mo17 2